Publications

Journal

Schäfer, Raphael; Nicke, Till; Höfener, Henning; Lange, Annkristin; Merhof, Dorit; Feuerhake, Friedrich; Schulz, Volkmar; Lotz, Johannes; Kiessling, Fabian
Overcoming Data Scarcity in Biomedical Imaging with a Foundational Multi-Task Model
Nature Communications, 2024 (accepted)

Schueler, Jan; Kuenzel, Jonas; Thuesing, Anna; Pion, Eric; Behncke, Rose Yinghan; Haegerling, Rene; Fuchs, Dieter; Kraus, Andre; Buchholz, Bjoern; Huang, Boqiang; Merhof, Dorit; Werner, Jens M.; Schmidt, Katharina M.; Hackl, Christina; Aung, Thiha; Härteis, Silke
Ultra high frequency ultrasound enables real-time visualization of blood supply from chorioallantoic membrane to human autosomal dominant polycystic kidney tissue
Scientific Reports, 2024

Azad, Reza; Lenßen, Pia; Jia, Yiwei; Strauch, Martin; Bener, Berk Alperen; Merhof, Dorit; Wöll, Dominik
Modeling the Temperature-Dependent Size Change of Polydisperse Nano-objects using a Deep Generative Model
NanoLetters, 2024

Merhof, Dorit
Automatisierte, KI-basierte Analyse von Bilddaten
Blick in die Wissenschaft, 2024

Azad, Reza; Jia, Yiwei; Aghdam, Ehsan K.; Cohen-Adad, Julien; Merhof, Dorit
TransCeption: Enhancing Medical Image Segmentation with Inception-like Transformer Design for Efficient Feature Fusion
Computational Visual Media, 2024

Spehr, Marc; Hamacher, Christoph; Degen, Rudolf; Franke, Melissa; Switacz, Victoria K.; Fleck, David; Katreddi, Raghu Ram; Hernandez-Clavijo, Andres; Strauch, Martin; Horio, Nao; Hachgenei, Enno; Spehr, Jennifer; Liberles, Stephen D.; Merhof, Dorit; Forni, Paolo E.; Zimmer-Bensch, Geraldine; Ben-Shaul, Yoram
A revised conceptual framework for mouse vomeronasal pumping and stimulus sampling
Current Biology, 2024

Conference

Pratibha Kumari, Daniel Reisenbüchler, Lucas Luttner, Nadine S. Schaadt, Friedrich Feuerhake
Continual Domain Incremental Learning for Privacy-aware Digital Pathology
International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2024 (accepted)

Daniel Reisenbüchler, Lucas Luttner, Nadine S. Schaadt, Friedrich Feuerhake, Dorit Merhof
Unsupervised Latent Stain Adaption for Digital Pathology
International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2024 (accepted)

Karimijafarbigloo, Sanaz; Azad, Reza; Kazerouni, Amirhossein; Merhof, Dorit
Reducing Uncertainty in 3D Medical Image Segmentation under Limited Annotations through Contrastive Learning
Medical Imaging with Deep Learning (MIDL), 2024

Karimijafarbigloo, Sanaz; Kazerouni, Amirhossein; Azad, Reza; Velichko, Yury; Bagci, Ulas; Merhof, Dorit
Leveraging Unlabeled Data for 3D Medical Image Segmentation through Self-Supervised Contrastive Learning
International Symposium on Biomedical Imaging (ISBI), 2024

Bozorgpour, Afshin; Azad, Babak; Azad, Reza; Velichko, Yury; Bagci, Ulas; Merhof, Dorit
HCA-Net: Hierarchical Context Attention Network for Intervertebral Disc Semantic Labeling
International Symposium on Biomedical Imaging (ISBI), 2024

Kazerouni, Amirhossein; Karimijafarbigloo, Sanaz; Azad, Reza; Velichko, Yury; Bagci, Ulas; Merhof, Dorit
FuseNet: Self-Supervised Dual-Path Network for Medical Image Segmentation
International Symposium on Biomedical Imaging (ISBI), 2024

Huang, Boqiang; Ying, Jiayu; Lyu, Ruizhi; Schaadt, Nadine; Klinkhammer, Barbara; Boor, Peter; Lotz, Johannes; Feuerhake, Friedrich; Merhof, Dorit
UTNetPara: A Hybrid CNN-Transformer Architecture with Multi-Scale Fusion for Wole-Slide Image Segmentation
International Symposium on Biomedical Imaging (ISBI), 2024

Azad, Reza; Niggemeier, Leon; Hüttemann, Michael; Kazerouni, Amirhossein; Aghdam, Ehsan Khodapanah; Velichko, Yuri; Bagci, Ulas; Merhof, Dorit
Beyond self-attention: deformable large kernel attention or medical image segmentation
IEEE/CVF Winter Conference on Applications of Computer Vision (WACV), 2024

Kazerouni, Amirhossein; Azad, Reza; Hosseini, Alireza; Merhof, Dorit; Bagci, Ulas
INCODE: Implicit neural conditioning with prior knowledge embeddings
IEEE/CVF Winter Conference on Applications of Computer Vision (WACV), 2024

Journal

Weninger, Leon; Ecke, Jarek; Jütten, Kerstin; Clusmann, Hans; Wiesmann, Martin; Merhof, Dorit; Na, Chuh-Hyoun
Diffusion MRI anomaly detection in glioma patients
Scientific Reports, 13, 20366, 2023

Sadegheih, Yousef; Weninger, Leon; Merhof, Dorit
Novel deep learning approaches for analyzing diffusion imaging data
KI - Künstliche Intelligenz, Springer, KUIN-D-23-00083, 2023

Kazerouni, Amirhossein; Aghdam, Ehsan Khodapanah; Heidari, Moein; Azad, Reza; Fayyaz, Mohsen; Hacihaliloglu, Ilker; Merhof, Dorit
Diffusion models in medical imaging: A comprehensive survey
Medical Image Analysis, 102846, 2023

Berijanian, Maryam; Schaadt, Nadine S; Huang, Boqiang; Lotz, Johannes; Feuerhake, Friedrich; Merhof, Dorit
Unsupervised many-to-many stain translation for histological image augmentation to improve classification accuracy
Journal of Pathology Informatics, 14, 100195, 2023

Torow, Natalia; Li, Ronghui; Hitch, Thomas Charles Adrian; … Gadermayr, Michael; … Merhof, Dorit; … Hornef, Mathias Walter
M cell maturation and cDC activation determine the onset of adaptive immune priming in the neonatal Peyer’s patch
Immunity, 2023

Zentrich, Eva; Wassermann, Laura; Struve, Birgitta; Selke, Kristin; Buettner, Manuela; Keubler, Lydia Maria; Reifenrath, Janin; Angrisani, Nina; Kempfert, Merle; Krause, Annika; Bellmann, Olaf; Kopaczka, Marcin; Merhof, Dorit; Bankstahl, Marion; Bleich, André; Häger, Christine
Postoperative Severity Assessment in Sheep
European Surgical Research, 64(1)27-36, 2023

Mösch, Lucas; Kunzcik, Janosch Frederick; Breuer, Lukas; Merhof, Dorit; Gass, Peter; Potschka, Heidrun; Zechner, Dietmar; Vollmar, Brigitte; Tolba, René; Häger, Christine; Bleich, André; Czaplik, Michael; Barbosa Pereira, Carina
Towards substitution of invasive telemetry: An integrated home cage concept for unobstrusive monitoring of objective physiological parameters in rodents
PLOS ONE, PONE-D-23-14127R1, 2023 (accepted)

Gupta, Anubha; Gehlot, Shiv; Goswami, Shubham; Motwani, Sachin; Gupta, Ritu; Faura, Álvaro García; Štepec, Dejan; Martinčič, Tomaž; Azad, Reza; Merhof, Dorit; Bozorgpour, Afshin; Azad, Babak; Sulaiman, Alaa; Pandey, Deepanshu; Gupta, Pradyumna;  Bhattacharya, Sumit; Sinha, Aman; Agarwal, Rohit; Qiu, Xinyun; Zhang; Yucheng; Fan, Ming; Park, Yoonbeom; Lee, Daehong; Park, Joon Sik; Lee, Kwangyeol; Ye, Jaehyung
SegPC-2021: A challenge & dataset on segmentation of Multiple Myeloma plasma cells from microscopic images
Medical Image Analysis, 83, 102677, 2023

Aja-Fernández, Santiago; Martín-Martín, Carmen; Planchuelo-Gómez, Álvaro; … Rauland, Amelie; Merhof, Dorit; … Pieciak, Tomasz
Validation of Deep Learning techniques for quality augmentation in diffusion MRI for clinical studies
NeuroImage: Clinical,103483, 2023

Bilic, Patrick; Christ, Patrick; Li, Hongwei Bran; … Merhof, Dorit; … Rippel, Oliver; … Weninger, Leon; … ; Menze, Bjoern
The liver tumor segmentation benchmark (LITS)
Medical Image Analysis, 84, 102680, 2023

Conference

Azad, Reza; Kazerouni, Amirhossein; Azad, Babak; Aghdam, Ehsan Khodapanah; Velichko, Yuri; Bagci, Ulas; Merhof, Dorit
Laplacian-Former: Overcoming the Limitations of Vision Transformers in Local Texture Detection
International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2023

Azad, Reza; Arimond, René; Aghdam, Ehsan Khodapanah; Kazerouni, Amirhosein; Merhof, Dorit
Dae-former: Dual attention-guided efficient transformer for medical image segmentation
MICCAI Workshop on Predictive Intelligence in Medicine (PRIME), 2023

Karimijafarbigloo, Sanaz; Azad, Reza; Merhof, Dorit
Self-supervised Few-shot Learning for Semantic Segmentation: An Annotation-free Approach
MICCAI Workshop on Predictive Intelligence in Medicine (PRIME), 2023

Bozorgpour, Afshin; Sadegheih, Yousef; Kazerouni, Amirhossein; Azad, Reza; Merhof, Dorit
DermoSegDiff: A Boundary-aware Segmentation Diffusion Model for Skin Lesion Delineation.
MICCAI Workshop on Predictive Intelligence in Medicine (PRIME), 2023

Azad, Reza; Kazerouni, Amirhossein; Sulaiman, Alaa; Bozorgpour, Afshin; Aghdam , Ehsan Khodapanah; Jose, Abin; Merhof, Dorit
Unlocking Fine-Grained Details with Wavelet-based High-Frequency Enhancement in Transformers
MICCAI Workshop on Machine Learning in Medical Imaging (MLMI), 2023

Molaei, Amirali; Aminimehr, Amirhossein; Tavakoli, Armin; Kazerouni, Amirhossein; Azad, Bobby; Azad, Reza; Merhof, Dorit
Implicit Neural Representation in Medical Imaging: A Comparative Survey
ICCV Workshop on Computer Vision for Automated Medical Diagnosis (CVAMD), 2023

Karimijafarbigloo, Sanaz; Azad, Reza; Kazerouni, Amirhossein; Velichko, Yuri; Bagci, Ulas; Merhof, Dorit
Self-supervised Semantic Segmentation: Consistency over Transformation
ICCV Workshop on Computer Vision for Automated Medical Diagnosis (CVAMD), 2023

Chen, Long; Wu, Yuli; Stegmaier, Johannes; Merhof, Dorit
SortedAP: Rethinking Evaluation Metrics for Instance Segmentation
ICCV Workshop on BioImage Computing, 2023

Karimijafarbigloo, Sanaz; Azad, Reza; Kazerouni, Amirhossein; Ebadollahi, Saeed; Merhof, Dorit
MMCFormer: Missing Modality Compensation Transformer for Brain Tumor Segmentation
Medical Imaging with Deep Learning (MIDL), 2023

Karimijafarbigloo, Sanaz; Azad, Reza; Kazerouni, Amirhossein; Merhof, Dorit
MS-Former: Multi-Scale Self-Guided Transformer for Medical Image Segmentation
Medical Imaging with Deep Learning (MIDL), 2023

Heidari, Moein; Kazerouni, Amirhossein; Soltany, Milad; Azad, Reza; Aghdam, Ehsan Khodapanah; Cohen-Adad, Julien; Merhof, Dorit
Hiformer: Hierarchical multi-scale representations using transformers for medical image segmentation
IEEE/CVF Winter Conference on Applications of Computer Vision (WACV), 6202-6212, 2023

Wu, Yuli; Karetic, Ivan; Stegmaier, Johannes; Walter, Peter; Merhof, Dorit
A Deep Learning-based in silico Framework for Optimization on Retinal Prosthetic Stimulation
International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), 2023

Rauland, Amelie; Merhof, Dorit
Using Synthetic Training Data in Neural Networks for the Estimation of Fiber Orientation Distribution Functions from Single Shell Data
International Symposium on Biomedical Imaging (ISBI), 2023

Aghdam, Ehsan Khodapanah; Azad, Reza; Zarvani, Maral; Merhof, Dorit
Attention Swin U-Net: Cross-Contextual Attention Mechanism for Skin Lesion Segmentation
International Symposium on Biomedical Imaging (ISBI), 2023

Rippel, Oliver; Merhof, Dorit
Anomaly Detection for Automated Visual Inspection: A Review
Bildverarbeitung in der Automation: Ausgewählte Beiträge des Jahreskolloquiums BVAu 2022, 1-13, 2023